Data for MFold and MatrixPlot

Use individual sequences for MFold program, and multiple sequences (the whole alignment in fact) for MatrixPlot.

>METJAN
GGUGUGCAUGGcua-gGCCgGGGGGuuGGGCG-UCCCCuguaaCCCGa-a-auCGCCCuuaugCGGGGGCc-g-aaaaCUUGGGggcGGCAUGUCcucCAGUCCUUCCU---UCCCAGAcUCCUcgaugagGUCUCGuCcCGUGGgGCUcggCG-guGGGGG-agCAUCUCCUguagGGGAGAUGuaacCCCCU-uu-acCUGCCgaaccCCGccaggCCCggaaGGGagcaaCGGuaGGCAGgacg-ucGGCgcUCACGgGggugCGGGACggagaAGGAaUCUGGGggcg---AGGGA-GGACUGgagGACAUGCCcacCCCAAGGa-agCCAUGCACACCacuuuu
>METVOL
--------UGGcua-gGCUgGGAGGuuAGGCG-UCUCCuguaaCUUGa-a-auCGCCU-u-ugCGAGAGCc-g-aaaaCUUGGGggcGGCAuAAGuucCCAAAUUUCAU---UCUUAAUUAGUAugucgacGUUUCGuCcUUUGGgGUaaGAug-guAAGAG-acuCUCUUUCuuaaGAAAGAGucaaaCUCUUuuc-guAuUUCgaaacCCGccaggCCCggaaGGGagcaaCGGuaGAAuUuacU-uCgACgcUCAAGgGguagCGGGGCugagUACUAAUUAAGGcaaa---AUGAG-AUUUGGu-gCUUuUGUCcacCCCAAGga-agCCA--------------
>METFER
--------AGGcua-gGCCgGGGGGuuAGGGG-UCCCCuguaaGCGCa-a-auCCCCUauaugGCGCGGCc-g-aaGCCCAGGAggcGGCAAGACc-gCCAGACAUCGG--cCUGAGGGUUAaAcaaugaaGCCUCGuCcCACAGgGCC-AUCG-guGGCGA-ggGUCCAGCUggagGGCUGGACcuaaUCGCCuuu-gcUGCGGg-aacGGGucaggCCCggaaGGGagcagCCCuaCCGCAgaCGgAUGGUgcUUGUGgGucaaCGGGGUggagUcUAACCCUCAGauca---CCGGU-GUCUGGu-gGUCUUGUCcacUCCUGGGCgugCCU--------------
>METTHE
-------UGGGcua-gACCgGAGGGuuAGGGG-UCCUCuguaaGCGCa-a-auCCCCUauacgGCGCGGUc-g-aaGUUCAGGGgacGGCuGAUCg-aCUGUUUAUCGG--cCCUGCUGAUUGGugucgaaGCCUCGuccCGCAGgAUC-AGUG-guGAUGG-ggCCCUGACUggagGGUCAGGGuaaaCCAUCuua-guCAUGGg-aacGGGucaggCCUggaaAGGagcagCCCuaCCAUGgaCAgCUGAUgcUUGCGgauuaaCGGGGUggagCCAGUCAGCGGGauca---CCGGU-AAAUGGa-aGGUCuGUCaacCCCUGAACgugCCCA-------------
>METACE
----UGAUGAGcua-gUCCgGGUAGccCGGCG-UUACCuguaaCCCGa-a-auCGCCGauaugCGGGGGAc-g-aaGCCaauGGaag-aUGcGUCa-aaGGGAUUcCAG--cCUGuGAUCUCaacugagaaACCCCGuCcUGCuugGAU-GaUG-caGGUAUgugGACUUGcUggaaAaCAGGUCc-ucAUACCcua-acUGCGGaaaccGGUcgaggCCCggaaGGGagcagACUcaCUGUGggCAacCGUCgcuuGCGgGgucgCGGGGUggagaaGAGAUUcCAGucua---CUGaA-AUCUCc--caGAUaCAcgaCCugcGGUgugCUCAUCA-----------
>HALHAL
--------GGAcua-gGCCgGGCGGuuUGGCU-CCGCCcgacaCCCGugagacAGUCAuc-agCGGGGGCc-g-aacac-CGGGcgc-GUCCGaCc--gCCgCGGUCGG--cCCCGGaaGCCaacggu-aaGCCUCGuCcGUCGGgGAC-GGCG-guCCGCg-gcGuGCGCCCgcagGGGCGUuCcgucGUGG-uuc-gaCGGUGgcaacCCGccaggCACggaaGUGagcagCGGacCACCGaaCGcCCGUCgcUCGACgGgucgCGGGGUggagaaGGCgaCCGGGacuac--CCGGC-CGGGa---acGcCGGGCuacCCCGa---cugUCCac------------
>ARCFUL
-----GGUGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCCGa-a-acCGCCGauacgCGGGGGCc-g-aaGCC-gaGGGgagGCCUGUCa-agCGGGCGGCag--cGGUUCCAGGCACcgcagagUCCUCGuCcCGGAGgGCC-GGCG-guUAUGgcCGGGCuGCCCggagGGGCuGUCCGc-CAUA-uua-gcCGGGGggaacGGCccaggCCCggaaGGGagcagGCUaaCCCCGgaCGaCCGGCgcUUCCGgGggugCGGGGAggagGUGCCUGGGGCUucaa---GCCGC-CCGua----aGGCAGGUcgaCCCgaGGCgugCCCACC-----------
>PYRHOR
--GGCGGCGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCGGa-a-acCGCCGauaugCCGGGGCc-g-aaGCCCGAGGggc-GGuuCCCg-aaGCCGCCUCUggaaGCCAGGGCCgAacgaugagUCCUCGuCcCGCGGgGUG-cCCG-guGGGGG-aGGCACGGCUgaagGGCCGUGCUaa-CCCCCuuu-ggGCCCCaaaccCCGcaaggCCCggaaGGGagcagCGGuaGGGGCcaCGGagCACgcUCGCGgGggugCGGGGAugaggUaGGCCCUGGUgaaa---GGAGG-CGGUgg---aGGGuuCCcaCCCUCGGGCgugCCCGCCGCC--------
>THECEL
--GGCGGCGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCGGa-a-acCGUCGauacgCCGGGGCc-g-aaGCCCGGGGggc-GGuuCCCg-aaGCCGUUCCCggaaGCCGGGGCacaacggugauCCCUCGuCcCACGGgGCC-GGCG-guGGGCg-gGGUCCGGCUggagGGCCGGGCUaacGCCC-uuu-gcCCGCCgaaccCCGucaggCCCggaaGGGagcagCGGuaGGCGGgaCGuUCGGCgcUCGUGgGguagCGGGGGugagc-gaGCCCCGGUggaa---GGGGA-CGGUgg---aGGGucCCcacCCCCGGGCgcgCCCGCCGCC--------
>PYROCC
--------CGGguaggGCC-GGGGGcuCGCCC-UCCCCcgagcCCCGa-a-auGGGCGuaaugCGGGGGCcaguaaCCCGCACGucg-GCCGUAGu--GGUCCAGGGCA--gaCCCGGCCGacccau-ga-CcCCCGuCcCGCGGgGCC-GGCG-gcGCGGa-GCC-CCCUCCggagGGAGGGaGGCuaCCGCccuu-acCGGGGgaaccAGGccaggCCCggaaGGGagcaaCCUaaCCCCGgaCGcCCGGCguUCGCGgGgccaCGGG-GugaggcaaCGGCCGGGcccc--cUGCCC-UGGGCC--cCUACGGCu-ggCGUGCGGGg-gCCGc-------------
>SULSOA
---AUGGUCAGguaggGUGgAGGGUcuCGCCA-GCCCUuaua-CCCAc-a---UGGCGcaacgUGGGCACcaguaaCUCCUAUGc---uAUAAUac-cUGCUCUUCGAg--aUCCCAGUCUaacuau-ga-UcAUCGcCcGACGGgGCG-aGAUaguCGUGGgUUCCCUUUCUggagGGAGAGGGAAuuCCACG-uu-gaCCGGGggaacCGGccaggCCCggaaGGGagcaaCCGugCCCGGcuAU-CCG-CguUCGUCgGucucCGAU-Aggagg-aAGACUGGGGguaaaucUCGGG-GAGUA----aggGUUAU-ggCAUAGGGGa-gCUGACCAU---------
>SULSOB
---GGGGUCAGggaggGUGGGGGaucuCGCCaaucCCUauua-CCCGc-a-a--GGCGuaaugCGGGCACcaguaaCUCCUACCc---uAUGGUgucuCCUAUcuguag--gUCCCAGUggagcgau-ga-agcCUGcCcAGCggggcU-UGGCgguCAUGGgCUUUCUCUCCggagGGAGAGAAAGuaCCAUG-auag-CUGGGggaauCGGcgaggCCCggaaGGGagcagCCGugCCUGGacGC-CAG-cguucGCUgGucaaCAGc-cagagu-gaAACUGGGGuaaa--cCUAUAgAUAGGu---agG-CCAU-ggGGUAGGGGg-uCUGGCCCCau-------

LAB EXERCISE DATA

For mfold:

>Haemophilus_influenzae_tRNA
GGGGATATAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGTCGTCGGTTCGATCCCGATTATCTCCACCA

For MatrixPlot: 

>RNA1
UGUGCAUGGcua-gGCCgGGGGGuuGGGCG-UCCCCuguaaCCCGa-a-auCGCCCuuaugCGGGGGCc-g-aaaaCUUGGGggcGGCAUGUCcucCAGUCCUUCCU---UCCCAGAcUCCUcgaugagGUCUCGuCcCGUGGgGCUcggCG-guGGGGG-agCAUCUCCUguagGGGAGAUGuaacCCCCU-uu-acCUGCCgaaccCCGccaggCCCggaaGGGagcaaCGGuaGGCAGgacg-ucGGCgcUCACGgGggugCGGGACggagaAGGAaUCUGGGggcg---AGGGA-GGACUGgagGACAUGCCcacCCCAAGGa-agCCAUGCACACCacuu
>RNA2
------UGGcua-gGCUgGGAGGuuAGGCG-UCUCCuguaaCUUGa-a-auCGCCU-u-ugCGAGAGCc-g-aaaaCUUGGGggcGGCAuAAGuucCCAAAUUUCAU---UCUUAAUUAGUAugucgacGUUUCGuCcUUUGGgGUaaGAug-guAAGAG-acuCUCUUUCuuaaGAAAGAGucaaaCUCUUuuc-guAuUUCgaaacCCGccaggCCCggaaGGGagcaaCGGuaGAAuUuacU-uCgACgcUCAAGgGguagCGGGGCugagUACUAAUUAAGGcaaa---AUGAG-AUUUGGu-gCUUuUGUCcacCCCAAGga-agCCA------------
>RNA3
------AGGcua-gGCCgGGGGGuuAGGGG-UCCCCuguaaGCGCa-a-auCCCCUauaugGCGCGGCc-g-aaGCCCAGGAggcGGCAAGACc-gCCAGACAUCGG--cCUGAGGGUUAaAcaaugaaGCCUCGuCcCACAGgGCC-AUCG-guGGCGA-ggGUCCAGCUggagGGCUGGACcuaaUCGCCuuu-gcUGCGGg-aacGGGucaggCCCggaaGGGagcagCCCuaCCGCAgaCGgAUGGUgcUUGUGgGucaaCGGGGUggagUcUAACCCUCAGauca---CCGGU-GUCUGGu-gGUCUUGUCcacUCCUGGGCgugCCU------------
>RNA4
-----UGGGcua-gACCgGAGGGuuAGGGG-UCCUCuguaaGCGCa-a-auCCCCUauacgGCGCGGUc-g-aaGUUCAGGGgacGGCuGAUCg-aCUGUUUAUCGG--cCCUGCUGAUUGGugucgaaGCCUCGuccCGCAGgAUC-AGUG-guGAUGG-ggCCCUGACUggagGGUCAGGGuaaaCCAUCuua-guCAUGGg-aacGGGucaggCCUggaaAGGagcagCCCuaCCAUGgaCAgCUGAUgcUUGCGgauuaaCGGGGUggagCCAGUCAGCGGGauca---CCGGU-AAAUGGa-aGGUCuGUCaacCCCUGAACgugCCCA-----------
>RNA5
--UGAUGAGcua-gUCCgGGUAGccCGGCG-UUACCuguaaCCCGa-a-auCGCCGauaugCGGGGGAc-g-aaGCCaauGGaag-aUGcGUCa-aaGGGAUUcCAG--cCUGuGAUCUCaacugagaaACCCCGuCcUGCuugGAU-GaUG-caGGUAUgugGACUUGcUggaaAaCAGGUCc-ucAUACCcua-acUGCGGaaaccGGUcgaggCCCggaaGGGagcagACUcaCUGUGggCAacCGUCgcuuGCGgGgucgCGGGGUggagaaGAGAUUcCAGucua---CUGaA-AUCUCc--caGAUaCAcgaCCugcGGUgugCUCAUCA---------
>RNA6
------GGAcua-gGCCgGGCGGuuUGGCU-CCGCCcgacaCCCGugagacAGUCAuc-agCGGGGGCc-g-aacac-CGGGcgc-GUCCGaCc--gCCgCGGUCGG--cCCCGGaaGCCaacggu-aaGCCUCGuCcGUCGGgGAC-GGCG-guCCGCg-gcGuGCGCCCgcagGGGCGUuCcgucGUGG-uuc-gaCGGUGgcaacCCGccaggCACggaaGUGagcagCGGacCACCGaaCGcCCGUCgcUCGACgGgucgCGGGGUggagaaGGCgaCCGGGacuac--CCGGC-CGGGa---acGcCGGGCuacCCCGa---cugUCCac----------
>RNA7
---GGUGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCCGa-a-acCGCCGauacgCGGGGGCc-g-aaGCC-gaGGGgagGCCUGUCa-agCGGGCGGCag--cGGUUCCAGGCACcgcagagUCCUCGuCcCGGAGgGCC-GGCG-guUAUGgcCGGGCuGCCCggagGGGCuGUCCGc-CAUA-uua-gcCGGGGggaacGGCccaggCCCggaaGGGagcagGCUaaCCCCGgaCGaCCGGCgcUUCCGgGggugCGGGGAggagGUGCCUGGGGCUucaa---GCCGC-CCGua----aGGCAGGUcgaCCCgaGGCgugCCCACC---------
>RNA8
GGCGGCGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCGGa-a-acCGCCGauaugCCGGGGCc-g-aaGCCCGAGGggc-GGuuCCCg-aaGCCGCCUCUggaaGCCAGGGCCgAacgaugagUCCUCGuCcCGCGGgGUG-cCCG-guGGGGG-aGGCACGGCUgaagGGCCGUGCUaa-CCCCCuuu-ggGCCCCaaaccCCGcaaggCCCggaaGGGagcagCGGuaGGGGCcaCGGagCACgcUCGCGgGggugCGGGGAugaggUaGGCCCUGGUgaaa---GGAGG-CGGUgg---aGGGuuCCcaCCCUCGGGCgugCCCGCCGCC------
>RNA9
GGCGGCGGGcua-gGCCgGGGGGuuCGGCG-UCCCCuguaaCCGGa-a-acCGUCGauacgCCGGGGCc-g-aaGCCCGGGGggc-GGuuCCCg-aaGCCGUUCCCggaaGCCGGGGCacaacggugauCCCUCGuCcCACGGgGCC-GGCG-guGGGCg-gGGUCCGGCUggagGGCCGGGCUaacGCCC-uuu-gcCCGCCgaaccCCGucaggCCCggaaGGGagcagCGGuaGGCGGgaCGuUCGGCgcUCGUGgGguagCGGGGGugagc-gaGCCCCGGUggaa---GGGGA-CGGUgg---aGGGucCCcacCCCCGGGCgcgCCCGCCGCC------
>RNA10
------CGGguaggGCC-GGGGGcuCGCCC-UCCCCcgagcCCCGa-a-auGGGCGuaaugCGGGGGCcaguaaCCCGCACGucg-GCCGUAGu--GGUCCAGGGCA--gaCCCGGCCGacccau-ga-CcCCCGuCcCGCGGgGCC-GGCG-gcGCGGa-GCC-CCCUCCggagGGAGGGaGGCuaCCGCccuu-acCGGGGgaaccAGGccaggCCCggaaGGGagcaaCCUaaCCCCGgaCGcCCGGCguUCGCGgGgccaCGGG-GugaggcaaCGGCCGGGcccc--cUGCCC-UGGGCC--cCUACGGCu-ggCGUGCGGGg-gCCGc-----------
>RNA11
-AUGGUCAGguaggGUGgAGGGUcuCGCCA-GCCCUuaua-CCCAc-a---UGGCGcaacgUGGGCACcaguaaCUCCUAUGc---uAUAAUac-cUGCUCUUCGAg--aUCCCAGUCUaacuau-ga-UcAUCGcCcGACGGgGCG-aGAUaguCGUGGgUUCCCUUUCUggagGGAGAGGGAAuuCCACG-uu-gaCCGGGggaacCGGccaggCCCggaaGGGagcaaCCGugCCCGGcuAU-CCG-CguUCGUCgGucucCGAU-Aggagg-aAGACUGGGGguaaaucUCGGG-GAGUA----aggGUUAU-ggCAUAGGGGa-gCUGACCAU-------
>RNA12
-GGGGUCAGggaggGUGGGGGaucuCGCCaaucCCUauua-CCCGc-a-a--GGCGuaaugCGGGCACcaguaaCUCCUACCc---uAUGGUgucuCCUAUcuguag--gUCCCAGUggagcgau-ga-agcCUGcCcAGCggggcU-UGGCgguCAUGGgCUUUCUCUCCggagGGAGAGAAAGuaCCAUG-auag-CUGGGggaauCGGcgaggCCCggaaGGGagcagCCGugCCUGGacGC-CAG-cguucGCUgGucaaCAGc-cagagu-gaAACUGGGGuaaa--cCUAUAgAUAGGu---agG-CCAU-ggGGUAGGGGg-uCUGGCCCCau-----