SEQUENCE MOTIF - CONCEPT

BUILD PROFILE:  Use these rules to build the Profile below from the 7
aligned Protein sequences.
1.  If 3 or fewer amino acid possibilities at a position, include ALL three.
2.  If 4 or more, put an X at that position.

Length (6 to 10):   

 

     

Protein 1   I   A   R   A   M   C  
Protein 2   I   N   N   A   M   C  
Protein 3   V   C   N   N   M   C  
Protein 4   V   W   N   N   M   C  
Protein 5   I   Y   N   N   M   C  
Protein 6   I   K   R   N   M   C  
Protein 7   M   H   N   A   M   C  
 

Profile :

  [IMV] - x - [RN] - [NA] - M - C  

The following protein sequences match the profile:

     
Sequence 1    M    Y    N    N    M    C  
Sequence 2    M    T    R    N    M    C  
Sequence 3    M    N    N    N    M    C  
Sequence 4    I    H    N    N    M    C  
Sequence 5    I    Y    R    N    M    C