SEQUENCE MOTIF - CONCEPT

Rules:
1.  Build the motif position by position, vertically.
2.  If fewer that 3 amino acid possibilities at a position include ALL three.
3.  If 4 or more, put an X at that position.

Length (6 to 10):

 

   

Protein 1   H   T   H   M   M   N  
Protein 2   H   T   P   E   M   T  
Protein 3   H   T   G   M   M   T  
Protein 4   H   T   D   M   M   T  
Protein 5   H   T   A   M   M   N  
Protein 6   H   T   M   E   M   T  
Protein 7   H   T   V   M   M   N  
 

Motif :

  H - T - x - [EM] - M - [TN]  

The following protein sequences match the profile:

     
Sequence 1    H    T    L    M    M    T  
Sequence 2    H    T    R    M    M    N  
Sequence 3    H    T    T    E    M    T  
Sequence 4    H    T    F    M    M    N  
Sequence 5    H    T    N    E    M    N