SEQUENCE MOTIF - CONCEPT
BUILD PROFILE: Use these rules to build the Profile below from the 7
aligned Protein sequences.
1.
If 3 or fewer amino acid possibilities at a position, include ALL three.
2.
If 4 or more, put an X at that position.
Length (6 to 10):
Protein 1
D
N
K
P
Y
A
Protein 2
R
A
P
I
P
Y
Protein 3
P
S
P
I
P
Y
Protein 4
D
K
P
I
Y
Y
Protein 5
R
W
K
I
Y
V
Protein 6
D
Y
K
P
P
Y
Protein 7
D
F
P
P
P
A
Profile :
[PDR]
-
x
-
[KP]
-
[IP]
-
[PY]
-
[YAV]
The following protein sequences match the profile:
Sequence 1
P
P
K
P
Y
Y
Sequence 2
P
F
K
I
Y
Y
Sequence 3
P
A
K
I
Y
Y
Sequence 4
P
G
K
I
P
Y
Sequence 5
P
Q
K
I
P
A