SEQUENCE MOTIF - CONCEPT

BUILD PROFILE:  Use these rules to build the Profile below from the 7
aligned Protein sequences.
1.  If 3 or fewer amino acid possibilities at a position, include ALL three.
2.  If 4 or more, put an X at that position.

Length (6 to 10):   

 

     

Protein 1   F   A   K   I   P   G  
Protein 2   F   A   H   I   L   S  
Protein 3   F   A   H   I   Q   S  
Protein 4   F   A   K   I   N   S  
Protein 5   F   A   K   I   R   G  
Protein 6   F   A   H   I   S   G  
Protein 7   F   A   H   I   Y   S  
 

Profile :

  F - A - [KH] - I - x - [GS]  

The following protein sequences match the profile:

     
Sequence 1    F    A    K    I    W    S  
Sequence 2    F    A    H    I    N    S  
Sequence 3    F    A    K    I    Y    G  
Sequence 4    F    A    H    I    F    S  
Sequence 5    F    A    K    I    C    S