SEQUENCE MOTIF - CONCEPT

BUILD PROFILE:  Use these rules to build the Profile below from the 7
aligned Protein sequences.
1.  If 3 or fewer amino acid possibilities at a position, include ALL three.
2.  If 4 or more, put an X at that position.

Length (6 to 10):   

 

     

Protein 1   N   S   S   R   H   Q  
Protein 2   F   H   K   R   H   T  
Protein 3   Y   S   K   R   H   Q  
Protein 4   C   S   K   R   H   Q  
Protein 5   M   S   S   R   H   G  
Protein 6   S   S   K   R   H   Q  
Protein 7   Q   M   M   R   H   T  
 

Profile :

  x - [SMH] - [SKM] - R - H - [QTG]  

The following protein sequences match the profile:

     
Sequence 1    L    M    K    R    H    T  
Sequence 2    L    M    S    R    H    T  
Sequence 3    H    S    S    R    H    Q  
Sequence 4    K    M    S    R    H    T  
Sequence 5    C    M    K    R    H    T